List of bioinformatic software used in the CCIC MS&P Lab
Matrix Science Mascot Server ClusterA powerful search engine for mass spectrometry data to identify proteins and peptide modifications
Proteome Software Scaffold 3.0To visualize complex proteomic data and to calculate spectral counting for label free experiments.
Bruker Protein ScapeA bioinformatics platform to process and organize a related data for a large proteomic project. Integrates LC-data, gel data, mass spectrometry data, search results and quantification results.
Bioinformatics Solutions PEAKSA bioinformatics package for proteomics mass spectrometry data analysis from raw data files. Performs peptide and protein identification, PTM and mutation analysis.
Progenesis Co-MetBioinformaticspackage for LC-MS and LC-MS/MS data to quantify and identify metabolites that are statistically significantly changing in the biological data set.